IL_7A01_128

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGG*CAGCAGCACUC

Length

16 nucleotides

Bulged bases

7A01|1|e2|G|933, 7A01|1|e2|A|935, 7A01|1|e2|C|936, 7A01|1|e2|U|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|731
7A01|1|e2|A|732
7A01|1|e2|A|733
7A01|1|e2|G|734
7A01|1|e2|G|735
*
7A01|1|e2|C|928
7A01|1|e2|A|929
7A01|1|e2|G|930
7A01|1|e2|C|931
7A01|1|e2|A|932
7A01|1|e2|G|933
7A01|1|e2|C|934
7A01|1|e2|A|935
7A01|1|e2|C|936
7A01|1|e2|U|937
7A01|1|e2|C|938

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 02

Ribosomal protein L14

Chain 62

60S RIBOSOMAL PROTEIN EL20

Chain t2

uL4