IL_7A01_131

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_131 not in the Motif Atlas

Geometric match to IL_4UYK_002

Geometric discrepancy: 0.2948

The information below is about IL_4UYK_002

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_06586.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

7A01|1|e2|G|743
7A01|1|e2|G|744
7A01|1|e2|G|745
*
7A01|1|e2|C|920
7A01|1|e2|C|921

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 02

Ribosomal protein L14

Chain 62

60S RIBOSOMAL PROTEIN EL20