IL_7A01_136

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAC*GAGGUUCUCUCGG

Length

16 nucleotides

Bulged bases

7A01|1|e2|G|1223, 7A01|1|e2|U|1225, 7A01|1|e2|U|1226, 7A01|1|e2|U|1230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|1077
7A01|1|e2|A|1078
7A01|1|e2|C|1079
*
7A01|1|e2|G|1221
7A01|1|e2|A|1222
7A01|1|e2|G|1223
7A01|1|e2|G|1224
7A01|1|e2|U|1225
7A01|1|e2|U|1226
7A01|1|e2|C|1227
7A01|1|e2|U|1228
7A01|1|e2|C|1229
7A01|1|e2|U|1230
7A01|1|e2|C|1231
7A01|1|e2|G|1232
7A01|1|e2|G|1233

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain R2

Ribosomal_L6e_N domain-containing protein

Chain U2

uL30