3D structure

PDB id
7A01 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CA*UCG
Length
5 nucleotides
Bulged bases
7A01|1|e2|C|1210
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7A01_139 not in the Motif Atlas
Geometric match to IL_3SN2_001
Geometric discrepancy: 0.2686
The information below is about IL_3SN2_001
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

7A01|1|e2|C|1086
7A01|1|e2|A|1087
*
7A01|1|e2|U|1209
7A01|1|e2|C|1210
7A01|1|e2|G|1211

Current chains

Chain e2
28S RIBOSOMAL RNA

Nearby chains

Chain U2
uL30

Coloring options:


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