IL_7A01_142

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGG*CCGUG

Length

9 nucleotides

Bulged bases

7A01|1|e2|G|1358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|1357
7A01|1|e2|G|1358
7A01|1|e2|G|1359
7A01|1|e2|G|1360
*
7A01|1|e2|C|1378
7A01|1|e2|C|1379
7A01|1|e2|G|1380
7A01|1|e2|U|1381
7A01|1|e2|G|1382

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain a7

60S ribosomal protein L13

Chain q2

uL15

Chain t2

uL4