IL_7A01_150
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 7A01|1|e2|A|1650, 7A01|1|e2|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_150 not in the Motif Atlas
- Geometric match to IL_4WF9_021
- Geometric discrepancy: 0.2702
- The information below is about IL_4WF9_021
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7A01|1|e2|G|1522
7A01|1|e2|A|1523
7A01|1|e2|A|1524
7A01|1|e2|A|1525
7A01|1|e2|G|1526
*
7A01|1|e2|C|1648
7A01|1|e2|U|1649
7A01|1|e2|A|1650
7A01|1|e2|G|1651
7A01|1|e2|U|1652
7A01|1|e2|A|1653
7A01|1|e2|G|1654
7A01|1|e2|C|1655
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain C2
- Ribosomal protein L37
- Chain a7
- 60S ribosomal protein L13
- Chain q2
- uL15
- Chain t2
- uL4
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