IL_7A01_155

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGG*CUAAUC

Length

10 nucleotides

Bulged bases

7A01|1|e2|A|1637, 7A01|1|e2|A|1638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|1624
7A01|1|e2|G|1625
7A01|1|e2|G|1626
7A01|1|e2|G|1627
*
7A01|1|e2|C|1635
7A01|1|e2|U|1636
7A01|1|e2|A|1637
7A01|1|e2|A|1638
7A01|1|e2|U|1639
7A01|1|e2|C|1640

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain 92

Uncharacterized protein

Chain C2

Ribosomal protein L37

Chain H2

uL22