IL_7A01_158

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGU*AAU

Length

6 nucleotides

Bulged bases

7A01|1|e2|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_158 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.3295

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7A01|1|e2|A|1723
7A01|1|e2|G|1724
7A01|1|e2|U|1725
*
7A01|1|e2|A|1837
7A01|1|e2|A|1838
7A01|1|e2|U|1839

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 72

eL21

Chain S2

60S RIBOSOMAL PROTEIN EL18

Chain U2

uL30

Chain r2

60S ribosomal protein L29