IL_7A01_163
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGA*UAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_163 not in the Motif Atlas
- Homologous match to IL_8C3A_045
- Geometric discrepancy: 0.1376
- The information below is about IL_8C3A_045
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7A01|1|e2|A|1749
7A01|1|e2|G|1750
7A01|1|e2|A|1751
*
7A01|1|e2|U|1779
7A01|1|e2|A|1780
7A01|1|e2|U|1781
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain G2
- 60S ribosomal protein L5
- Chain L2
- Ribosomal protein L10 (Predicted)
- Chain X2
- Ribosomal protein L10 (Predicted)
- Chain d2
- 5S ribosomal RNA; 5S rRNA
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