IL_7A01_179

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7A01|1|e2|A|2001

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_179 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.5041

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

7A01|1|e2|G|2000
7A01|1|e2|A|2001
7A01|1|e2|G|2002
7A01|1|e2|U|2003
7A01|1|e2|G|2004
*
7A01|1|e2|C|2013
7A01|1|e2|U|2014
7A01|1|e2|C|2015

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain K2

60S acidic ribosomal protein P0

Chain M2

Uncharacterized protein