IL_7A01_196

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

7A01|1|e2|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_196 not in the Motif Atlas

Geometric match to IL_5TBW_029

Geometric discrepancy: 0.3941

The information below is about IL_5TBW_029

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7A01|1|e2|C|2704
7A01|1|e2|G|2705
*
7A01|1|e2|C|2710
7A01|1|e2|G|2711
7A01|1|e2|G|2712

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain 82

Ribosomal protein L22

Chain m2

Uncharacterized protein