IL_7A01_214

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7A01|1|e2|A|3901, 7A01|1|e2|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_214 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.1289

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7A01|1|e2|G|3900
7A01|1|e2|A|3901
7A01|1|e2|A|3902
*
7A01|1|e2|U|4558
7A01|1|e2|A|4559
7A01|1|e2|C|4560
7A01|1|e2|C|4561

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain H2

uL22