IL_7A01_216

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7A01|1|e2|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_216 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.132

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7A01|1|e2|G|3916
7A01|1|e2|A|3917
*
7A01|1|e2|U|4384
7A01|1|e2|A|4385
7A01|1|e2|C|4386
7A01|1|e2|C|4387

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 92

Uncharacterized protein