IL_7A01_218

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCCCCG*CGGCCCUGCGGGC

Length

20 nucleotides

Bulged bases

7A01|1|e2|G|4034

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|3974
7A01|1|e2|C|3975
7A01|1|e2|C|3976
7A01|1|e2|C|3977
7A01|1|e2|C|3978
7A01|1|e2|C|3979
7A01|1|e2|G|3980
*
7A01|1|e2|C|4025
7A01|1|e2|G|4026
7A01|1|e2|G|4027
7A01|1|e2|C|4028
7A01|1|e2|C|4029
7A01|1|e2|C|4030
7A01|1|e2|U|4031
7A01|1|e2|G|4032
7A01|1|e2|C|4033
7A01|1|e2|G|4034
7A01|1|e2|G|4035
7A01|1|e2|G|4036
7A01|1|e2|C|4037

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 42

Ribosomal protein