IL_7A01_224
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 7A01|1|e2|G|4084, 7A01|1|e2|G|4086, 7A01|1|e2|G|4087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_224 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2958
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
7A01|1|e2|G|4082
7A01|1|e2|U|4083
7A01|1|e2|G|4084
7A01|1|e2|A|4085
7A01|1|e2|G|4086
7A01|1|e2|G|4087
7A01|1|e2|C|4088
*
7A01|1|e2|G|4161
7A01|1|e2|C|4162
7A01|1|e2|U|4163
7A01|1|e2|C|4164
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 92
- Uncharacterized protein
- Chain V2
- 60S RIBOSOMAL PROTEIN EL8
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain m2
- Uncharacterized protein
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