IL_7A01_228
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUG*CA
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_228 not in the Motif Atlas
- Geometric match to IL_4V9F_005
- Geometric discrepancy: 0.2376
- The information below is about IL_4V9F_005
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_15011.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 54
Unit IDs
7A01|1|e2|U|4295
7A01|1|e2|U|4296
7A01|1|e2|G|4297
*
7A01|1|e2|C|4314
7A01|1|e2|A|4315
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 72
- eL21
- Chain F2
- eL42
- Chain G2
- 60S ribosomal protein L5
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain r2
- 60S ribosomal protein L29
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