IL_7A01_231
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GG*UCC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_231 not in the Motif Atlas
- Homologous match to IL_5TBW_102
- Geometric discrepancy: 0.18
- The information below is about IL_5TBW_102
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 41
Unit IDs
7A01|1|e2|G|4400
7A01|1|e2|G|4401
*
7A01|1|e2|U|4442
7A01|1|e2|C|4443
7A01|1|e2|C|4444
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 52
- uL3
- Chain L2
- Ribosomal protein L10 (Predicted)
- Chain X2
- Ribosomal protein L10 (Predicted)
- Chain r2
- 60S ribosomal protein L29
Coloring options: