IL_7A01_254

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUCGGAUAG*UGCGGAGUGC

Length

21 nucleotides

Bulged bases

7A01|1|e2|U|4763, 7A01|1|e2|C|4871, 7A01|1|e2|G|4872, 7A01|1|e2|A|4874, 7A01|1|e2|G|4877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|4755
7A01|1|e2|C|4756
7A01|1|e2|C|4757
7A01|1|e2|U|4758
7A01|1|e2|C|4759
7A01|1|e2|G|4760
7A01|1|e2|G|4761
7A01|1|e2|A|4762
7A01|1|e2|U|4763
7A01|1|e2|A|4764
7A01|1|e2|G|4765
*
7A01|1|e2|U|4869
7A01|1|e2|G|4870
7A01|1|e2|C|4871
7A01|1|e2|G|4872
7A01|1|e2|G|4873
7A01|1|e2|A|4874
7A01|1|e2|G|4875
7A01|1|e2|U|4876
7A01|1|e2|G|4877
7A01|1|e2|C|4878

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 02

Ribosomal protein L14

Chain 62

60S RIBOSOMAL PROTEIN EL20

Chain T2

60S ribosomal protein L6

Chain W2

Uncharacterized protein

Chain w2

60S RIBOSOMAL PROTEIN UL13