IL_7A01_255

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_255 not in the Motif Atlas

Geometric match to IL_4V84_070

Geometric discrepancy: 0.384

The information below is about IL_4V84_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23164.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7A01|1|e2|G|4769
7A01|1|e2|U|4770
7A01|1|e2|C|4771
7A01|1|e2|C|4772
*
7A01|1|e2|G|4863
7A01|1|e2|U|4864
7A01|1|e2|C|4865

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain W2

Uncharacterized protein

Chain w2

60S RIBOSOMAL PROTEIN UL13