IL_7A01_264

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

7A01|1|e2|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|U|5003
7A01|1|e2|C|5004
7A01|1|e2|G|5005
7A01|1|e2|U|5006
7A01|1|e2|A|5007
7A01|1|e2|C|5008
7A01|1|e2|G|5009
*
7A01|1|e2|U|5039
7A01|1|e2|U|5040
7A01|1|e2|G|5041
7A01|1|e2|A|5042
7A01|1|e2|A|5043
7A01|1|e2|A|5044

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain l2

Ribosomal protein L24

Chain u2

eL31