IL_7A01_271

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UACAGGAC*GGCCCUGUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|U|530
7A01|1|K3|A|531
7A01|1|K3|C|532
7A01|1|K3|A|533
7A01|1|K3|G|534
7A01|1|K3|G|535
7A01|1|K3|A|536
7A01|1|K3|C|537
*
7A01|1|K3|G|546
7A01|1|K3|G|547
7A01|1|K3|C|548
7A01|1|K3|C|549
7A01|1|K3|C|550
7A01|1|K3|U|551
7A01|1|K3|G|552
7A01|1|K3|U|553
7A01|1|K3|A|554

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain d3

Ribosomal protein S9 (Predicted)

Chain s3

40S RIBOSOMAL PROTEIN ES30