IL_7A01_277
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GACAGGAUUGACAG*CUUUCUCGAUUC
- Length
- 26 nucleotides
- Bulged bases
- 7A01|1|K3|G|1285, 7A01|1|K3|G|1290, 7A01|1|K3|A|1291, 7A01|1|K3|U|1314
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|G|1281
7A01|1|K3|A|1282
7A01|1|K3|C|1283
7A01|1|K3|A|1284
7A01|1|K3|G|1285
7A01|1|K3|G|1286
7A01|1|K3|A|1287
7A01|1|K3|U|1288
7A01|1|K3|U|1289
7A01|1|K3|G|1290
7A01|1|K3|A|1291
7A01|1|K3|C|1292
7A01|1|K3|A|1293
7A01|1|K3|G|1294
*
7A01|1|K3|C|1305
7A01|1|K3|U|1306
7A01|1|K3|U|1307
7A01|1|K3|U|1308
7A01|1|K3|C|1309
7A01|1|K3|U|1310
7A01|1|K3|C|1311
7A01|1|K3|G|1312
7A01|1|K3|A|1313
7A01|1|K3|U|1314
7A01|1|K3|U|1315
7A01|1|K3|C|1316
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- ribosomal protein uS19
- Chain E3
- S10_plectin domain-containing protein
- Chain H3
- ribosomal protein uS14
- Chain Q3
- 40S ribosomal protein S27a
- Chain e3
- 40S ribosomal protein S12
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