IL_7A01_279
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 7A01|1|K3|U|1494, 7A01|1|K3|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7A01_279 not in the Motif Atlas
- Homologous match to IL_8P9A_440
- Geometric discrepancy: 0.3187
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93811.1
- Basepair signature
- cWW-tHS-L-R-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
7A01|1|K3|U|1333
7A01|1|K3|G|1334
7A01|1|K3|G|1335
*
7A01|1|K3|U|1492
7A01|1|K3|C|1493
7A01|1|K3|U|1494
7A01|1|K3|G|1495
7A01|1|K3|U|1496
7A01|1|K3|G|1497
7A01|1|K3|A|1498
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain E3
- S10_plectin domain-containing protein
- Chain H3
- ribosomal protein uS14
- Chain I3
- Ribosomal_S10 domain-containing protein
- Chain Y3
- Ribosomal protein S3
Coloring options: