IL_7A01_283
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCUCAGCGUGUGCCUACC*GUAACCCGUUGAACCC
- Length
- 34 nucleotides
- Bulged bases
- 7A01|1|K3|C|1554, 7A01|1|K3|A|1580, 7A01|1|K3|C|1581, 7A01|1|K3|U|1585, 7A01|1|K3|G|1587
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|G|1541
7A01|1|K3|C|1542
7A01|1|K3|U|1543
7A01|1|K3|C|1544
7A01|1|K3|A|1545
7A01|1|K3|G|1546
7A01|1|K3|C|1547
7A01|1|K3|G|1548
7A01|1|K3|U|1549
7A01|1|K3|G|1550
7A01|1|K3|U|1551
7A01|1|K3|G|1552
7A01|1|K3|C|1553
7A01|1|K3|C|1554
7A01|1|K3|U|1555
7A01|1|K3|A|1556
7A01|1|K3|C|1557
7A01|1|K3|C|1558
*
7A01|1|K3|G|1577
7A01|1|K3|U|1578
7A01|1|K3|A|1579
7A01|1|K3|A|1580
7A01|1|K3|C|1581
7A01|1|K3|C|1582
7A01|1|K3|C|1583
7A01|1|K3|G|1584
7A01|1|K3|U|1585
7A01|1|K3|U|1586
7A01|1|K3|G|1587
7A01|1|K3|A|1588
7A01|1|K3|A|1589
7A01|1|K3|C|1590
7A01|1|K3|C|1591
7A01|1|K3|C|1592
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- Uncharacterized protein
- Chain E3
- S10_plectin domain-containing protein
- Chain H3
- ribosomal protein uS14
- Chain H5
- Uncharacterized protein
- Chain I3
- Ribosomal_S10 domain-containing protein
- Chain M3
- ribosomal protein eS25
- Chain N3
- Ribosomal protein S5
- Chain Y3
- Ribosomal protein S3
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