IL_7A01_294

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

7A01|1|e2|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A01_294 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.1424

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

7A01|1|e2|G|2847
7A01|1|e2|G|2848
7A01|1|e2|A|2849
7A01|1|e2|A|2850
7A01|1|e2|G|2851
7A01|1|e2|U|2852
7A01|1|e2|C|2853
7A01|1|e2|G|2854
7A01|1|e2|G|2855
*
7A01|1|e2|C|3837
7A01|1|e2|U|3838
7A01|1|e2|G|3839
7A01|1|e2|U|3840
7A01|1|e2|C|3841

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain k2

eL14