IL_7A01_295

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUGAGAGGUGUAGAAUAAGUGGGAGGCCCCCG*CGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCG

Length

74 nucleotides

Bulged bases

7A01|1|e2|U|3959, 7A01|1|e2|U|3964, 7A01|1|e2|A|3966, 7A01|1|e2|G|3970, 7A01|1|e2|C|3975, 7A01|1|e2|C|3977, 7A01|1|e2|C|3979, 7A01|1|e2|C|4030, 7A01|1|e2|G|4034, 7A01|1|e2|U|4044, 7A01|1|e2|C|4052, 7A01|1|e2|A|4056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|3948
7A01|1|e2|A|3949
7A01|1|e2|U|3950
7A01|1|e2|G|3951
7A01|1|e2|A|3952
7A01|1|e2|G|3953
7A01|1|e2|A|3954
7A01|1|e2|G|3955
7A01|1|e2|G|3956
7A01|1|e2|U|3957
7A01|1|e2|G|3958
7A01|1|e2|U|3959
7A01|1|e2|A|3960
7A01|1|e2|G|3961
7A01|1|e2|A|3962
7A01|1|e2|A|3963
7A01|1|e2|U|3964
7A01|1|e2|A|3965
7A01|1|e2|A|3966
7A01|1|e2|G|3967
7A01|1|e2|U|3968
7A01|1|e2|G|3969
7A01|1|e2|G|3970
7A01|1|e2|G|3971
7A01|1|e2|A|3972
7A01|1|e2|G|3973
7A01|1|e2|G|3974
7A01|1|e2|C|3975
7A01|1|e2|C|3976
7A01|1|e2|C|3977
7A01|1|e2|C|3978
7A01|1|e2|C|3979
7A01|1|e2|G|3980
*
7A01|1|e2|C|4025
7A01|1|e2|G|4026
7A01|1|e2|G|4027
7A01|1|e2|C|4028
7A01|1|e2|C|4029
7A01|1|e2|C|4030
7A01|1|e2|U|4031
7A01|1|e2|G|4032
7A01|1|e2|C|4033
7A01|1|e2|G|4034
7A01|1|e2|G|4035
7A01|1|e2|G|4036
7A01|1|e2|C|4037
7A01|1|e2|C|4038
7A01|1|e2|G|4039
7A01|1|e2|C|4040
7A01|1|e2|C|4041
7A01|1|e2|G|4042
7A01|1|e2|G|4043
7A01|1|e2|U|4044
7A01|1|e2|G|4045
7A01|1|e2|A|4046
7A01|1|e2|A|4047
7A01|1|e2|A|4048
7A01|1|e2|U|4049
7A01|1|e2|A|4050
7A01|1|e2|C|4051
7A01|1|e2|C|4052
7A01|1|e2|A|4053
7A01|1|e2|C|4054
7A01|1|e2|U|4055
7A01|1|e2|A|4056
7A01|1|e2|C|4057
7A01|1|e2|U|4058
7A01|1|e2|C|4059
7A01|1|e2|U|4060
7A01|1|e2|G|4061
7A01|1|e2|A|4062
7A01|1|e2|U|4063
7A01|1|e2|C|4064
7A01|1|e2|G|4065

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 42

Ribosomal protein

Chain B2

60S ribosomal protein L36

Chain E1

INTERNAL RIBOSOME ENTRY SITE