IL_7A09_008

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A09_008 not in the Motif Atlas

Geometric match to IL_1T0E_002

Geometric discrepancy: 0.1804

The information below is about IL_1T0E_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7A09|1|2|G|108
7A09|1|2|U|109
7A09|1|2|U|110
*
7A09|1|2|G|351
7A09|1|2|U|352
7A09|1|2|C|353

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain n

40S ribosomal protein S11

Chain q

40S ribosomal protein S4, X isoform

Chain t

40S ribosomal protein S8