IL_7A09_020

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

7A09|1|2|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A09_020 not in the Motif Atlas

Homologous match to IL_4V88_399

Geometric discrepancy: 0.2234

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7A09|1|2|G|312
7A09|1|2|A|313
7A09|1|2|U|314
*
7A09|1|2|A|336
7A09|1|2|C|337

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain q

40S ribosomal protein S4, X isoform

Chain r

40S ribosomal protein S6