IL_7A09_031

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A09_031 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.137

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7A09|1|2|G|563
7A09|1|2|A|564
7A09|1|2|G|565
*
7A09|1|2|C|585
7A09|1|2|G|586
7A09|1|2|A|587
7A09|1|2|G|588
7A09|1|2|G|589
7A09|1|2|A|590
7A09|1|2|U|591
7A09|1|2|C|592

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S30

Chain c

40S ribosomal protein S9