IL_7A09_115

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

7A09|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A09_115 not in the Motif Atlas

Geometric match to IL_2PJP_001

Geometric discrepancy: 0.3511

The information below is about IL_2PJP_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7A09|1|2|G|925
7A09|1|2|A|926
*
7A09|1|2|U|1015
7A09|1|2|U|1016
7A09|1|2|U|1017

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S27

Chain m

40S ribosomal protein S13