IL_7A0S_007

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

7A0S|1|X|G|215
7A0S|1|X|U|216
7A0S|1|X|U|217
7A0S|1|X|A|218
7A0S|1|X|G|219
7A0S|1|X|U|220
7A0S|1|X|A|221
7A0S|1|X|G|222
*
7A0S|1|X|C|230
7A0S|1|X|G|231
7A0S|1|X|A|232
7A0S|1|X|A|233
7A0S|1|X|C|234
7A0S|1|X|C|235
7A0S|1|X|C|236

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15