IL_7A0S_045

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7A0S|1|X|A|1275
7A0S|1|X|U|1276
7A0S|1|X|G|1277
7A0S|1|X|A|1278
7A0S|1|X|G|1279
7A0S|1|X|U|1280
7A0S|1|X|A|1281
7A0S|1|X|A|1282
*
7A0S|1|X|U|1994
7A0S|1|X|G|1995
7A0S|1|X|A|1996
7A0S|1|X|A|1997
7A0S|1|X|A|1998
7A0S|1|X|U|1999
7A0S|1|X|U|2000

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32