IL_7A0S_065

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7A0S|1|X|C|1792, 7A0S|1|X|C|1808, 7A0S|1|X|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7A0S|1|X|U|1789
7A0S|1|X|G|1790
7A0S|1|X|C|1791
7A0S|1|X|C|1792
7A0S|1|X|A|1793
7A0S|1|X|A|1794
7A0S|1|X|C|1795
*
7A0S|1|X|G|1805
7A0S|1|X|G|1806
7A0S|1|X|A|1807
7A0S|1|X|C|1808
7A0S|1|X|G|1809
7A0S|1|X|U|1810
7A0S|1|X|A|1811
7A0S|1|X|U|1812
7A0S|1|X|A|1813

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain A

50S ribosomal protein L2