IL_7A0S_066

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

7A0S|1|X|C|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7A0S|1|X|C|1829
7A0S|1|X|C|1830
7A0S|1|X|G|1831
7A0S|1|X|G|1832
*
7A0S|1|X|C|1885
7A0S|1|X|G|1886

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain A

50S ribosomal protein L2