IL_7A0S_087

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7A0S|1|X|C|2445
7A0S|1|X|C|2446
7A0S|1|X|G|2447
7A0S|1|X|A|2448
7A0S|1|X|G|2449
*
7A0S|1|X|C|2459
7A0S|1|X|G|2460
7A0S|1|X|G|2461
7A0S|1|X|C|2462
7A0S|1|X|G|2463

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain J

50S ribosomal protein L16