IL_7A0S_094

3D structure

PDB id

7A0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Deinococcus radiodurans ribosome bounded with mycinamicin I

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7A0S|1|X|C|2631
7A0S|1|X|U|2632
7A0S|1|X|A|2633
7A0S|1|X|G|2634
7A0S|1|X|U|2635
7A0S|1|X|A|2636
7A0S|1|X|C|2637
*
7A0S|1|X|G|2642
7A0S|1|X|G|2643
7A0S|1|X|A|2644
7A0S|1|X|C|2645
7A0S|1|X|C|2646
7A0S|1|X|G|2647

Current chains

Chain X

RNA (2732-MER)

Nearby chains

Chain E

50S ribosomal protein L6

Chain H

50S ribosomal protein L14