IL_7A1G_024

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases (A, C, G, U)

440U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A1G_024 not in the Motif Atlas

Homologous match to IL_4V88_407

Geometric discrepancy: 0.1248

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.17

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7A1G|1|2|U|439
7A1G|1|2|U|440
7A1G|1|2|A|441
*
7A1G|1|2|U|463
7A1G|1|2|A|464

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A

Chain x

Translation initiation factor RLI1