IL_7A1G_043

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

7A1G|1|2|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A1G_043 not in the Motif Atlas

Homologous match to IL_8P9A_416

Geometric discrepancy: 0.4911

The information below is about IL_8P9A_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A1G|1|2|A|817
7A1G|1|2|C|818
7A1G|1|2|G|819
7A1G|1|2|U|820
7A1G|1|2|U|821
7A1G|1|2|U|822
*
7A1G|1|2|A|850
7A1G|1|2|U|851
7A1G|1|2|C|852
7A1G|1|2|G|853
7A1G|1|2|U|854

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein S7-A