IL_7A1G_050

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

7A1G|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A1G_050 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.1607

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

7A1G|1|2|U|893
7A1G|1|2|U|894
7A1G|1|2|G|895
7A1G|1|2|U|896
7A1G|1|2|C|897
7A1G|1|2|A|898
7A1G|1|2|G|899
*
7A1G|1|2|C|910
7A1G|1|2|U|911
7A1G|1|2|U|912
7A1G|1|2|G|913
7A1G|1|2|G|914
7A1G|1|2|A|915
7A1G|1|2|U|916
7A1G|1|2|U|917
7A1G|1|2|U|918
7A1G|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-B