IL_7A1G_099

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

7A1G|1|2|U|1370, 7A1G|1|2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A1G_099 not in the Motif Atlas

Geometric match to IL_4V88_457

Geometric discrepancy: 0.2513

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7A1G|1|2|G|1352
7A1G|1|2|U|1353
7A1G|1|2|G|1354
*
7A1G|1|2|U|1369
7A1G|1|2|U|1370
7A1G|1|2|A|1371
7A1G|1|2|U|1372
7A1G|1|2|C|1373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S16-A

Chain J

40S ribosomal protein S19-A

Chain K

40S ribosomal protein S20