IL_7A5G_043

3D structure

PDB id

7A5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.33 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5G_043 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1632

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7A5G|1|A3|A|2946
7A5G|1|A3|U|2947
7A5G|1|A3|C|2948
*
7A5G|1|A3|G|2976
7A5G|1|A3|G|2977
7A5G|1|A3|U|2978
7A5G|1|A3|U|2979
7A5G|1|A3|U|2980

Current chains

Chain A3

16S rRNA

Nearby chains

Chain I3

39S ribosomal protein L10, mitochondrial

Chain N3

39S ribosomal protein L16, mitochondrial

Chain o3

Ribosomal protein 63, mitochondrial