IL_7A5G_113

3D structure

PDB id

7A5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.33 Å

Loop

Sequence

UAGC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5G_113 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2729

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7A5G|1|A6|U|678
7A5G|1|A6|A|679
7A5G|1|A6|G|680
7A5G|1|A6|C|681
*
7A5G|1|A6|G|924
7A5G|1|A6|U|925
7A5G|1|A6|C|926
7A5G|1|A6|A|927

Current chains

Chain A6

12S rRNA

Nearby chains

Chain J6

28S ribosomal protein S12, mitochondrial

Chain O6

28S ribosomal protein S18b, mitochondrial

Chain Z

Elongation factor Tu, mitochondrial