IL_7A5J_030

3D structure

PDB id

7A5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UUAA

Length

6 nucleotides

Bulged bases

7A5J|1|A|U|2563, 7A5J|1|A|A|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5J_030 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.1552

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

7A5J|1|A|U|2552
7A5J|1|A|G|2553
*
7A5J|1|A|U|2562
7A5J|1|A|U|2563
7A5J|1|A|A|2564
7A5J|1|A|A|2565

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial