IL_7A5K_042

3D structure

PDB id

7A5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitoribosome in the post translocation state bound to mtEF-G1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7A5K_042 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.1722

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

7A5K|1|A3|A|2946
7A5K|1|A3|U|2947
7A5K|1|A3|C|2948
*
7A5K|1|A3|G|2976
7A5K|1|A3|G|2977
7A5K|1|A3|U|2978
7A5K|1|A3|U|2979
7A5K|1|A3|U|2980

Current chains

Chain A3

16S rRNA

Nearby chains

Chain I3

39S ribosomal protein L10, mitochondrial

Chain N3

39S ribosomal protein L16, mitochondrial

Chain o3

Ribosomal protein 63, mitochondrial