IL_7ABF_005
3D structure
- PDB id
- 7ABF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human pre-Bact-1 spliceosome core structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUAC*GAGCC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ABF_005 not in the Motif Atlas
- Geometric match to IL_6CZR_167
- Geometric discrepancy: 0.3871
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7ABF|1|6|G|38
7ABF|1|6|A|39
7ABF|1|6|U|40
7ABF|1|6|A|41
7ABF|1|6|C|42
*
7ABF|1|Z|G|63
7ABF|1|Z|A|64
7ABF|1|Z|G|65
7ABF|1|Z|C|66
7ABF|1|Z|C|67
Current chains
- Chain 6
- U6 small nuclear RNA
- Chain Z
- MINX M3 RNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain I
- Pre-mRNA-splicing factor 38A
- Chain N
- Zinc finger matrin-type protein 2
- Chain X
- WW domain-binding protein 11
- Chain q
- Ubiquitin-like protein 5
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