IL_7AC7_138

3D structure

PDB id

7AC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AC7_138 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1413

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7AC7|1|2|U|409
7AC7|1|2|G|410
7AC7|1|2|A|411
7AC7|1|2|A|412
7AC7|1|2|G|413
7AC7|1|2|A|414
7AC7|1|2|A|415
7AC7|1|2|G|416
*
7AC7|1|2|U|427
7AC7|1|2|G|428
7AC7|1|2|U|429
7AC7|1|2|A|430
7AC7|1|2|A|431
7AC7|1|2|A|432
7AC7|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Transfer-messenger RNA; tmRNA

Chain i

30S ribosomal protein S4