IL_7AC7_192

3D structure

PDB id

7AC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of accomodated trans-translation complex on E. Coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AGA*UCCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AC7_192 not in the Motif Atlas

Homologous match to IL_4WF9_003

Geometric discrepancy: 0.2987

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7AC7|1|1|A|42
7AC7|1|1|G|43
7AC7|1|1|A|44
*
7AC7|1|1|U|434
7AC7|1|1|C|435
7AC7|1|1|C|436
7AC7|1|1|U|437

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34