IL_7ACR_129

3D structure

PDB id

7ACR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of post-translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7ACR|1|2|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ACR_129 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1417

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7ACR|1|2|G|446
7ACR|1|2|G|447
7ACR|1|2|A|448
7ACR|1|2|G|449
7ACR|1|2|G|450
*
7ACR|1|2|C|483
7ACR|1|2|G|484
7ACR|1|2|U|485
7ACR|1|2|U|486
7ACR|1|2|A|487
7ACR|1|2|C|488

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain u

30S ribosomal protein S16