IL_7AF3_006

3D structure

PDB id

7AF3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCUGCAU*AUG(2MG)C

Length

12 nucleotides

Bulged bases

7AF3|1|1|C|1054

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AF3_006 not in the Motif Atlas

Homologous match to IL_5J7L_047

Geometric discrepancy: 0.1924

The information below is about IL_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AF3|1|1|G|1050
7AF3|1|1|C|1051
7AF3|1|1|U|1052
7AF3|1|1|G|1053
7AF3|1|1|C|1054
7AF3|1|1|A|1055
7AF3|1|1|U|1056
*
7AF3|1|1|A|1204
7AF3|1|1|U|1205
7AF3|1|1|G|1206
7AF3|1|1|2MG|1207
7AF3|1|1|C|1208

Current chains

Chain 1

16S rRNA (head)

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14