3D structure

PDB id
7AF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state I (head domain)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AF5_014 not in the Motif Atlas
Geometric match to IL_5J7L_053
Geometric discrepancy: 0.0889
The information below is about IL_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

7AF5|1|1|C|1158
7AF5|1|1|U|1159
7AF5|1|1|G|1160
7AF5|1|1|C|1161
*
7AF5|1|1|G|1175
7AF5|1|1|A|1176
7AF5|1|1|G|1177
7AF5|1|1|G|1178
7AF5|1|1|A|1179
7AF5|1|1|A|1180
7AF5|1|1|G|1181

Current chains

Chain 1
16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain B
30S ribosomal protein S2
Chain I
30S ribosomal protein S9

Coloring options:


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